If I had to guess, and obviously I am guessing, I would say the 'weapon' is all the data the park has collected on its guests over the last 20 yrs which is what young William eluded to, to his father in law. That building at the end is probably where it is all stored.
But I also think we are seeing what Happened already still and the end is where they find Arnold and all the Hosts have drowned in that lake that might not flood until the hosts try to access that building.
I am assuming Hopkins character is really dead - no longer in the credits. And I think the events happening to William might also be in a different time than what is going on with Delores. But again those are just hypothetical ponderings. LOL

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